Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 AC004706.3-202ENST00000621574 984 ntBASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TM9SF3Q9HD45 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 ELK2BP-201ENST00000415014 1224 ntBASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 AL049757.1-201ENST00000616842 1596 ntBASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TM9SF3Q9HD45 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 AC132938.5-201ENST00000624980 1813 ntBASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 AC006504.4-201ENST00000592118 1568 ntBASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 PMS2P2-201ENST00000425039 1128 ntBASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 KRT18P2-201ENST00000447938 1258 ntBASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM9SF3Q9HD45 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms