Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 AC148477.8-201ENST00000624298 468 ntBASIC20.54■□□□□ 0.88
RNF41Q9H4P4 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF41Q9H4P4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 AL031284.1-201ENST00000419297 478 ntBASIC20.53■□□□□ 0.88
RNF41Q9H4P4 FDX1P1-201ENST00000449115 551 ntBASIC20.53■□□□□ 0.88
RNF41Q9H4P4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.53■□□□□ 0.88
RNF41Q9H4P4 AC006557.2-201ENST00000592985 1240 ntBASIC20.53■□□□□ 0.88
RNF41Q9H4P4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RNF41Q9H4P4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 LINC00982-205ENST00000420957 435 ntBASIC20.52■□□□□ 0.88
RNF41Q9H4P4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 HNRNPDP1-201ENST00000439535 754 ntBASIC20.52■□□□□ 0.88
RNF41Q9H4P4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 FAM215A-202ENST00000632077 792 ntBASIC20.52■□□□□ 0.88
RNF41Q9H4P4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF41Q9H4P4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.52■□□□□ 0.87
RNF41Q9H4P4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RNF41Q9H4P4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
RNF41Q9H4P4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.52■□□□□ 0.87
RNF41Q9H4P4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 AP001005.1-201ENST00000571755 1248 ntBASIC20.51■□□□□ 0.87
RNF41Q9H4P4 AL139424.1-201ENST00000607572 797 ntBASIC20.51■□□□□ 0.87
RNF41Q9H4P4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 AC004706.3-202ENST00000621574 984 ntBASIC20.51■□□□□ 0.87
RNF41Q9H4P4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms