Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 ARSEP1-201ENST00000420443 635 ntBASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 AC241585.1-201ENST00000433527 519 ntBASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 ATP5G2P4-201ENST00000442175 420 ntBASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 ALG1L8P-201ENST00000533887 760 ntBASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 AL009183.1-201ENST00000603760 355 ntBASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 AC093677.2-201ENST00000600169 1863 ntBASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF541Q9H0D2 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 U91328.1-201ENST00000437528 223 ntBASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF541Q9H0D2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 TSSK5P-201ENST00000423978 907 ntBASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 MIR4453-201ENST00000584019 89 ntBASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 AC009118.2-201ENST00000613275 655 ntBASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.66■□□□□ 0.9
ZNF541Q9H0D2 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms