Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 LINC01311-201ENST00000565162 1445 ntBASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 AC012313.10-201ENST00000623509 926 ntBASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM55Q9BYV6 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM55Q9BYV6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM55Q9BYV6 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 AL024508.2-201ENST00000607749 1894 ntBASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 HOXB1-202ENST00000577092 1414 ntBASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM55Q9BYV6 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM55Q9BYV6 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms