Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
NUP88Q99567 AC092865.5-201ENST00000545435 363 ntBASIC20.4■□□□□ 0.86
NUP88Q99567 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.4■□□□□ 0.86
NUP88Q99567 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 KRT18P55-202ENST00000578578 1546 ntBASIC20.4■□□□□ 0.86
NUP88Q99567 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NUP88Q99567 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.39■□□□□ 0.86
NUP88Q99567 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
NUP88Q99567 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NUP88Q99567 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NUP88Q99567 AC138028.4-201ENST00000564984 1845 ntBASIC20.39■□□□□ 0.86
NUP88Q99567 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NUP88Q99567 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NUP88Q99567 AC006504.4-201ENST00000592118 1568 ntBASIC20.39■□□□□ 0.85
NUP88Q99567 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.39■□□□□ 0.85
NUP88Q99567 KRT18P13-201ENST00000400056 1290 ntBASIC20.39■□□□□ 0.85
NUP88Q99567 ELK2BP-201ENST00000415014 1224 ntBASIC20.39■□□□□ 0.85
NUP88Q99567 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
NUP88Q99567 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.39■□□□□ 0.85
NUP88Q99567 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.39■□□□□ 0.85
NUP88Q99567 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.39■□□□□ 0.85
NUP88Q99567 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.85
NUP88Q99567 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.39■□□□□ 0.85
NUP88Q99567 STK25P1-201ENST00000585406 838 ntBASIC20.39■□□□□ 0.85
NUP88Q99567 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.39■□□□□ 0.85
NUP88Q99567 AC027601.4-201ENST00000611259 610 ntBASIC20.39■□□□□ 0.85
NUP88Q99567 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
NUP88Q99567 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.39■□□□□ 0.85
NUP88Q99567 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 FZD10-202ENST00000539839 3282 ntBASIC20.39■□□□□ 0.85
NUP88Q99567 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NUP88Q99567 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NUP88Q99567 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NUP88Q99567 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
NUP88Q99567 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.38■□□□□ 0.85
NUP88Q99567 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.38■□□□□ 0.85
NUP88Q99567 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.38■□□□□ 0.85
NUP88Q99567 OR6D1P-202ENST00000641007 5290 ntBASIC20.38■□□□□ 0.85
NUP88Q99567 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.38■□□□□ 0.85
NUP88Q99567 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.38■□□□□ 0.85
NUP88Q99567 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
NUP88Q99567 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.38■□□□□ 0.85
NUP88Q99567 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.38■□□□□ 0.85
NUP88Q99567 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.38■□□□□ 0.85
NUP88Q99567 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
NUP88Q99567 AC006557.2-201ENST00000592985 1240 ntBASIC20.38■□□□□ 0.85
NUP88Q99567 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.38■□□□□ 0.85
NUP88Q99567 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.38■□□□□ 0.85
NUP88Q99567 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.38■□□□□ 0.85
NUP88Q99567 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
NUP88Q99567 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
NUP88Q99567 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.37■□□□□ 0.85
NUP88Q99567 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.37■□□□□ 0.85
NUP88Q99567 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
NUP88Q99567 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.37■□□□□ 0.85
NUP88Q99567 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.37■□□□□ 0.85
NUP88Q99567 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 AC003669.1-201ENST00000334569 611 ntBASIC20.37■□□□□ 0.85
NUP88Q99567 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.37■□□□□ 0.85
NUP88Q99567 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
NUP88Q99567 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.37■□□□□ 0.85
NUP88Q99567 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 AL139424.1-201ENST00000607572 797 ntBASIC20.37■□□□□ 0.85
NUP88Q99567 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.37■□□□□ 0.85
NUP88Q99567 AL589182.2-201ENST00000619332 1049 ntBASIC20.37■□□□□ 0.85
NUP88Q99567 AC139530.3-201ENST00000620344 690 ntBASIC20.37■□□□□ 0.85
NUP88Q99567 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.37■□□□□ 0.85
NUP88Q99567 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NUP88Q99567 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 137.2 ms