Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 AL353779.1-201ENST00000434793 351 ntBASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 AC022210.1-201ENST00000449856 793 ntBASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 AC007541.1-201ENST00000570282 1469 ntBASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 MIR4453-201ENST00000584019 89 ntBASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 AL033527.4-201ENST00000641026 673 ntBASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMC1BQ8NDV3 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.52■□□□□ 0.87
SMC1BQ8NDV3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 RN7SL752P-201ENST00000463779 287 ntBASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 API5-211ENST00000534695 560 ntTSL 5 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMC1BQ8NDV3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 AP006294.1-201ENST00000415407 339 ntBASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 HCG4-201ENST00000418983 998 ntBASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 IGHV3-52-201ENST00000519770 353 ntBASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 SPTSSB-204ENST00000617024 1292 ntBASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms