Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 CA15P1-201ENST00000481698 905 ntBASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 AC010203.1-204ENST00000548782 407 ntBASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 LINC01451-201ENST00000623792 534 ntBASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
ZNF540Q8NDQ6 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 AC087388.1-201ENST00000571370 1112 ntBASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 AL031432.5-201ENST00000641059 760 ntBASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ZNF540Q8NDQ6 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 AK4P3-201ENST00000418260 669 ntBASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 AC104076.2-201ENST00000448912 469 ntBASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 AC008040.2-201ENST00000461049 708 ntBASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 FAM87A-204ENST00000613235 858 ntBASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms