Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 MIR662-201ENST00000384847 95 ntBASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 AC145285.6-201ENST00000604632 637 ntBASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RUNDC3AQ59EK9 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 SLC25A3P1-201ENST00000443844 931 ntBASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 ZNF444P1-201ENST00000559497 298 ntBASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 GPR32P1-201ENST00000601788 811 ntBASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RUNDC3AQ59EK9 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 AC010203.1-204ENST00000548782 407 ntBASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 AC011558.1-201ENST00000623459 338 ntBASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RUNDC3AQ59EK9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms