Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 PHGDH-209ENST00000641074 1780 ntBASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 AC011676.5-201ENST00000624864 2660 ntBASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 NKILA-202ENST00000614771 2598 ntBASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 AC092910.1-201ENST00000482027 1129 ntBASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 AP001094.4-201ENST00000579008 2176 ntBASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC144BQ3MJ40 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 AC098831.1-202ENST00000438821 336 ntBASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 PGAM5P1-201ENST00000518923 814 ntBASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC144BQ3MJ40 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms