Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
SOX4Q06945 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 YBX2P1-201ENST00000394192 760 ntBASIC18.56■□□□□ 0.56
SOX4Q06945 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 MRPL20P1-201ENST00000400819 433 ntBASIC18.56■□□□□ 0.56
SOX4Q06945 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.56■□□□□ 0.56
SOX4Q06945 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.56■□□□□ 0.56
SOX4Q06945 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.56■□□□□ 0.56
SOX4Q06945 AC092865.6-201ENST00000642101 219 ntBASIC18.56■□□□□ 0.56
SOX4Q06945 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 NOC2LP2-201ENST00000407594 1944 ntBASIC18.56■□□□□ 0.56
SOX4Q06945 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SOX4Q06945 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX4Q06945 AC068880.1-201ENST00000507289 2297 ntBASIC18.56■□□□□ 0.56
SOX4Q06945 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX4Q06945 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX4Q06945 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX4Q06945 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX4Q06945 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX4Q06945 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX4Q06945 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SOX4Q06945 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX4Q06945 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.55■□□□□ 0.56
SOX4Q06945 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX4Q06945 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX4Q06945 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.55■□□□□ 0.56
SOX4Q06945 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.55■□□□□ 0.56
SOX4Q06945 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX4Q06945 AC010327.4-202ENST00000591484 748 ntBASIC18.55■□□□□ 0.56
SOX4Q06945 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.55■□□□□ 0.56
SOX4Q06945 AC010654.1-201ENST00000615722 808 ntBASIC18.55■□□□□ 0.56
SOX4Q06945 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SOX4Q06945 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX4Q06945 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX4Q06945 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SOX4Q06945 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SOX4Q06945 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
SOX4Q06945 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.54■□□□□ 0.56
SOX4Q06945 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.54■□□□□ 0.56
SOX4Q06945 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX4Q06945 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX4Q06945 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX4Q06945 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX4Q06945 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX4Q06945 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX4Q06945 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX4Q06945 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX4Q06945 AC004832.2-201ENST00000426397 482 ntBASIC18.53■□□□□ 0.56
SOX4Q06945 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.53■□□□□ 0.56
SOX4Q06945 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX4Q06945 PAWRP1-201ENST00000451083 565 ntBASIC18.53■□□□□ 0.56
SOX4Q06945 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.53■□□□□ 0.56
SOX4Q06945 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.53■□□□□ 0.56
SOX4Q06945 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SOX4Q06945 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.53■□□□□ 0.56
SOX4Q06945 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.53■□□□□ 0.56
SOX4Q06945 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.53■□□□□ 0.56
SOX4Q06945 GGTLC5P-201ENST00000617623 998 ntBASIC18.53■□□□□ 0.56
SOX4Q06945 AL513190.1-201ENST00000621254 727 ntBASIC18.53■□□□□ 0.56
SOX4Q06945 AC055717.3-201ENST00000622967 595 ntBASIC18.53■□□□□ 0.56
SOX4Q06945 AC010507.1-201ENST00000633895 436 ntBASIC18.53■□□□□ 0.56
SOX4Q06945 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
SOX4Q06945 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX4Q06945 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms