Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
RNF4P78317 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 AC046185.3-201ENST00000623228 1824 ntBASIC16.15■□□□□ 0.18
RNF4P78317 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
RNF4P78317 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.15■□□□□ 0.18
RNF4P78317 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.15■□□□□ 0.18
RNF4P78317 OR7E14P-202ENST00000530490 1290 ntBASIC16.15■□□□□ 0.18
RNF4P78317 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 LYSMD4-203ENST00000378904 2122 ntBASIC16.15■□□□□ 0.18
RNF4P78317 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF4P78317 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.14■□□□□ 0.18
RNF4P78317 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
RNF4P78317 AC067852.2-201ENST00000590513 2313 ntBASIC16.14■□□□□ 0.18
RNF4P78317 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
RNF4P78317 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.14■□□□□ 0.17
RNF4P78317 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
RNF4P78317 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RNF4P78317 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.14■□□□□ 0.17
RNF4P78317 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 RNA5SP419-201ENST00000515908 135 ntBASIC16.14■□□□□ 0.17
RNF4P78317 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.14■□□□□ 0.17
RNF4P78317 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.14■□□□□ 0.17
RNF4P78317 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.14■□□□□ 0.17
RNF4P78317 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.14■□□□□ 0.17
RNF4P78317 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.14■□□□□ 0.17
RNF4P78317 AC107918.4-202ENST00000641623 219 ntBASIC16.14■□□□□ 0.17
RNF4P78317 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
RNF4P78317 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.14■□□□□ 0.17
RNF4P78317 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RNF4P78317 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.14■□□□□ 0.17
RNF4P78317 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.14■□□□□ 0.17
RNF4P78317 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF4P78317 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
RNF4P78317 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.13■□□□□ 0.17
RNF4P78317 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 AC093909.1-201ENST00000504731 1122 ntBASIC16.13■□□□□ 0.17
RNF4P78317 AC079776.4-201ENST00000511039 504 ntBASIC16.13■□□□□ 0.17
RNF4P78317 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.13■□□□□ 0.17
RNF4P78317 AL589182.2-201ENST00000619332 1049 ntBASIC16.13■□□□□ 0.17
RNF4P78317 FAM215A-202ENST00000632077 792 ntBASIC16.13■□□□□ 0.17
RNF4P78317 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RNF4P78317 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RNF4P78317 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RNF4P78317 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.13■□□□□ 0.17
RNF4P78317 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RNF4P78317 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
RNF4P78317 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
RNF4P78317 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
RNF4P78317 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.13■□□□□ 0.17
RNF4P78317 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms