Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH6P52701 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
MSH6P52701 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC23.91■■□□□ 1.42
MSH6P52701 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH6P52701 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
MSH6P52701 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC23.91■■□□□ 1.42
MSH6P52701 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC23.91■■□□□ 1.42
MSH6P52701 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH6P52701 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
MSH6P52701 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
MSH6P52701 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
MSH6P52701 AC022144.1-201ENST00000602255 1580 ntBASIC23.9■■□□□ 1.42
MSH6P52701 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH6P52701 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
MSH6P52701 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
MSH6P52701 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH6P52701 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH6P52701 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.9■■□□□ 1.42
MSH6P52701 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC23.9■■□□□ 1.42
MSH6P52701 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
MSH6P52701 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
MSH6P52701 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
MSH6P52701 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.89■■□□□ 1.42
MSH6P52701 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
MSH6P52701 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
MSH6P52701 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC23.89■■□□□ 1.41
MSH6P52701 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC23.89■■□□□ 1.41
MSH6P52701 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC23.89■■□□□ 1.41
MSH6P52701 MMP17-203ENST00000535004 719 ntTSL 3 BASIC23.89■■□□□ 1.41
MSH6P52701 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH6P52701 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH6P52701 AL009183.1-201ENST00000603760 355 ntBASIC23.89■■□□□ 1.41
MSH6P52701 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC23.89■■□□□ 1.41
MSH6P52701 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC23.89■■□□□ 1.41
MSH6P52701 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH6P52701 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC23.89■■□□□ 1.41
MSH6P52701 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC23.88■■□□□ 1.41
MSH6P52701 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 AP000974.1-201ENST00000623909 2387 ntBASIC23.88■■□□□ 1.41
MSH6P52701 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC23.88■■□□□ 1.41
MSH6P52701 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC23.88■■□□□ 1.41
MSH6P52701 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
MSH6P52701 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
MSH6P52701 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC23.88■■□□□ 1.41
MSH6P52701 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC23.88■■□□□ 1.41
MSH6P52701 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH6P52701 COQ4-205ENST00000609948 956 ntTSL 2 BASIC23.88■■□□□ 1.41
MSH6P52701 AL590560.3-201ENST00000623350 461 ntBASIC23.88■■□□□ 1.41
MSH6P52701 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
MSH6P52701 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
MSH6P52701 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC23.87■■□□□ 1.41
MSH6P52701 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH6P52701 AC093677.2-201ENST00000600169 1863 ntBASIC23.87■■□□□ 1.41
MSH6P52701 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH6P52701 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH6P52701 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH6P52701 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
MSH6P52701 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
MSH6P52701 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH6P52701 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC23.87■■□□□ 1.41
MSH6P52701 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.87■■□□□ 1.41
MSH6P52701 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
MSH6P52701 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH6P52701 TMPRSS11CP-201ENST00000453277 683 ntBASIC23.87■■□□□ 1.41
MSH6P52701 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC23.87■■□□□ 1.41
MSH6P52701 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC23.87■■□□□ 1.41
MSH6P52701 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH6P52701 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH6P52701 AC098818.2-201ENST00000564925 2320 ntBASIC23.86■■□□□ 1.41
MSH6P52701 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH6P52701 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms