Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.03■□□□□ 0.32
PCNAP12004 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.03■□□□□ 0.32
PCNAP12004 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCNAP12004 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.03■□□□□ 0.32
PCNAP12004 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
PCNAP12004 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PCNAP12004 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.02■□□□□ 0.32
PCNAP12004 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.02■□□□□ 0.32
PCNAP12004 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.02■□□□□ 0.32
PCNAP12004 PCED1CP-201ENST00000419887 785 ntBASIC17.02■□□□□ 0.32
PCNAP12004 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PCNAP12004 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.02■□□□□ 0.32
PCNAP12004 RN7SL606P-201ENST00000472779 293 ntBASIC17.02■□□□□ 0.32
PCNAP12004 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.02■□□□□ 0.32
PCNAP12004 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.02■□□□□ 0.32
PCNAP12004 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
PCNAP12004 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PCNAP12004 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.02■□□□□ 0.32
PCNAP12004 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCNAP12004 AL023806.1-201ENST00000603994 1649 ntBASIC17.02■□□□□ 0.31
PCNAP12004 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCNAP12004 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCNAP12004 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCNAP12004 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCNAP12004 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.02■□□□□ 0.31
PCNAP12004 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.01■□□□□ 0.31
PCNAP12004 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
PCNAP12004 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.01■□□□□ 0.31
PCNAP12004 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
PCNAP12004 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.01■□□□□ 0.31
PCNAP12004 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.01■□□□□ 0.31
PCNAP12004 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.01■□□□□ 0.31
PCNAP12004 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.01■□□□□ 0.31
PCNAP12004 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.01■□□□□ 0.31
PCNAP12004 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.01■□□□□ 0.31
PCNAP12004 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.01■□□□□ 0.31
PCNAP12004 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
PCNAP12004 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.01■□□□□ 0.31
PCNAP12004 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PCNAP12004 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 IER3-202ENST00000376377 1350 ntBASIC17.01■□□□□ 0.31
PCNAP12004 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
PCNAP12004 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCNAP12004 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17■□□□□ 0.31
PCNAP12004 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PCNAP12004 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCNAP12004 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17■□□□□ 0.31
PCNAP12004 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms