Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MIR3687-2-201ENST00000577708 61 ntBASIC16.93■□□□□ 0.3
HOXC4P09017 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC4P09017 MIR3687-1-201ENST00000614492 61 ntBASIC16.93■□□□□ 0.3
HOXC4P09017 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
HOXC4P09017 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HOXC4P09017 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC4P09017 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC4P09017 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HOXC4P09017 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
HOXC4P09017 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HOXC4P09017 MIR1233-2-201ENST00000408138 82 ntBASIC16.92■□□□□ 0.3
HOXC4P09017 MIR1233-1-201ENST00000408722 82 ntBASIC16.92■□□□□ 0.3
HOXC4P09017 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 AC023274.1-201ENST00000418278 595 ntBASIC16.92■□□□□ 0.3
HOXC4P09017 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
HOXC4P09017 GPX1P2-201ENST00000429271 606 ntBASIC16.92■□□□□ 0.3
HOXC4P09017 CXCL1P1-201ENST00000502804 216 ntBASIC16.92■□□□□ 0.3
HOXC4P09017 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HOXC4P09017 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 AC007064.4-201ENST00000637740 555 ntBASIC16.92■□□□□ 0.3
HOXC4P09017 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC4P09017 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC4P09017 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC4P09017 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HOXC4P09017 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 AC087163.2-201ENST00000457299 853 ntBASIC16.91■□□□□ 0.3
HOXC4P09017 AC112482.1-201ENST00000492080 688 ntBASIC16.91■□□□□ 0.3
HOXC4P09017 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXC4P09017 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.91■□□□□ 0.3
HOXC4P09017 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXC4P09017 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 AC010507.1-201ENST00000633895 436 ntBASIC16.91■□□□□ 0.3
HOXC4P09017 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 NEFHP1-201ENST00000412845 2629 ntBASIC16.91■□□□□ 0.3
HOXC4P09017 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC4P09017 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC4P09017 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC4P09017 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HOXC4P09017 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HOXC4P09017 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXC4P09017 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.9■□□□□ 0.3
HOXC4P09017 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.9■□□□□ 0.3
HOXC4P09017 SLC25A6P2-201ENST00000497974 877 ntBASIC16.9■□□□□ 0.3
HOXC4P09017 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.9■□□□□ 0.3
HOXC4P09017 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.9■□□□□ 0.3
HOXC4P09017 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.9■□□□□ 0.3
HOXC4P09017 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.9■□□□□ 0.3
HOXC4P09017 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.9■□□□□ 0.3
HOXC4P09017 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms