Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A3BPQ9Y5P4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 AF186996.4-201ENST00000467186 377 ntBASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 AL773604.1-201ENST00000617417 272 ntBASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 AP000867.4-201ENST00000641616 219 ntBASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 AL645608.8-201ENST00000606034 2086 ntBASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A3BPQ9Y5P4 OR6D1P-202ENST00000641007 5290 ntBASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 HLA-A-201ENST00000376802 1334 ntBASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AC148477.8-201ENST00000624298 468 ntBASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A3BPQ9Y5P4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AC141586.5-201ENST00000624546 2050 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AC018712.1-201ENST00000455767 687 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AC073648.2-201ENST00000510116 352 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AC079776.4-201ENST00000511039 504 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 RNA5SP419-201ENST00000515908 135 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 SART3-203ENST00000546611 1184 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AD001527.2-201ENST00000622994 785 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 AL356309.3-201ENST00000624132 1934 ntBASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.52■□□□□ 0.72
COL4A3BPQ9Y5P4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.52■□□□□ 0.71
COL4A3BPQ9Y5P4 AC020916.1-201ENST00000587762 1774 ntBASIC19.52■□□□□ 0.71
COL4A3BPQ9Y5P4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A3BPQ9Y5P4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL4A3BPQ9Y5P4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A3BPQ9Y5P4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A3BPQ9Y5P4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A3BPQ9Y5P4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A3BPQ9Y5P4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.51■□□□□ 0.71
COL4A3BPQ9Y5P4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms