Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX3Q9UBR4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 PCDHB18P-201ENST00000524813 2368 ntBASIC17.55■□□□□ 0.4
LHX3Q9UBR4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 AC006504.4-201ENST00000592118 1568 ntBASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 RPS2P28-201ENST00000314255 741 ntBASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 AC105339.3-201ENST00000560043 636 ntBASIC17.55■□□□□ 0.4
LHX3Q9UBR4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 AC116407.3-201ENST00000623905 1129 ntBASIC17.55■□□□□ 0.4
LHX3Q9UBR4 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
LHX3Q9UBR4 AC016396.2-201ENST00000562575 1417 ntBASIC17.55■□□□□ 0.4
LHX3Q9UBR4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.54■□□□□ 0.4
LHX3Q9UBR4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.54■□□□□ 0.4
LHX3Q9UBR4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 CROCCP2-202ENST00000412962 2773 ntBASIC17.54■□□□□ 0.4
LHX3Q9UBR4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.54■□□□□ 0.4
LHX3Q9UBR4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 AC005332.8-201ENST00000622750 2735 ntBASIC17.53■□□□□ 0.4
LHX3Q9UBR4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.53■□□□□ 0.4
LHX3Q9UBR4 AC092910.1-201ENST00000482027 1129 ntBASIC17.53■□□□□ 0.4
LHX3Q9UBR4 AC093909.1-201ENST00000504731 1122 ntBASIC17.53■□□□□ 0.4
LHX3Q9UBR4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 198.6 ms