Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.76■□□□□ 0.43
USP39Q53GS9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.76■□□□□ 0.43
USP39Q53GS9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
USP39Q53GS9 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.76■□□□□ 0.43
USP39Q53GS9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP39Q53GS9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 KRT18P28-201ENST00000453838 1332 ntBASIC17.75■□□□□ 0.43
USP39Q53GS9 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
USP39Q53GS9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.75■□□□□ 0.43
USP39Q53GS9 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.75■□□□□ 0.43
USP39Q53GS9 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.75■□□□□ 0.43
USP39Q53GS9 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
USP39Q53GS9 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
USP39Q53GS9 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
USP39Q53GS9 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP39Q53GS9 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.75■□□□□ 0.43
USP39Q53GS9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
USP39Q53GS9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USP39Q53GS9 PCDHB18P-201ENST00000524813 2368 ntBASIC17.75■□□□□ 0.43
USP39Q53GS9 AC004817.3-201ENST00000602957 2129 ntBASIC17.75■□□□□ 0.43
USP39Q53GS9 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.75■□□□□ 0.43
USP39Q53GS9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP39Q53GS9 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.74■□□□□ 0.43
USP39Q53GS9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
USP39Q53GS9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 CRYGEP-201ENST00000412192 528 ntBASIC17.74■□□□□ 0.43
USP39Q53GS9 SPDYE21P-201ENST00000413323 827 ntBASIC17.74■□□□□ 0.43
USP39Q53GS9 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.74■□□□□ 0.43
USP39Q53GS9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.74■□□□□ 0.43
USP39Q53GS9 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.74■□□□□ 0.43
USP39Q53GS9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.74■□□□□ 0.43
USP39Q53GS9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 AC002310.6-201ENST00000624451 1377 ntBASIC17.74■□□□□ 0.43
USP39Q53GS9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP39Q53GS9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.74■□□□□ 0.43
USP39Q53GS9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.73■□□□□ 0.43
USP39Q53GS9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 AC008764.6-201ENST00000595909 2069 ntBASIC17.73■□□□□ 0.43
USP39Q53GS9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.73■□□□□ 0.43
USP39Q53GS9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.73■□□□□ 0.43
USP39Q53GS9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 ESPNP-201ENST00000270691 2015 ntBASIC17.73■□□□□ 0.43
USP39Q53GS9 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.73■□□□□ 0.43
USP39Q53GS9 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.73■□□□□ 0.43
USP39Q53GS9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.73■□□□□ 0.43
USP39Q53GS9 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.73■□□□□ 0.43
USP39Q53GS9 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.73■□□□□ 0.43
USP39Q53GS9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.73■□□□□ 0.43
USP39Q53GS9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP39Q53GS9 AC022898.2-201ENST00000616822 1312 ntBASIC17.72■□□□□ 0.43
USP39Q53GS9 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
USP39Q53GS9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
USP39Q53GS9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.72■□□□□ 0.43
USP39Q53GS9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 AC010460.3-201ENST00000511359 1579 ntBASIC17.72■□□□□ 0.43
USP39Q53GS9 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP39Q53GS9 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms