Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC58Q4VC31 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC58Q4VC31 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CCDC58Q4VC31 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC58Q4VC31 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 AC007663.1-201ENST00000438948 1240 ntBASIC15.67■□□□□ 0.1
CCDC58Q4VC31 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 AC026471.5-201ENST00000615068 467 ntBASIC15.67■□□□□ 0.1
CCDC58Q4VC31 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.67■□□□□ 0.1
CCDC58Q4VC31 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC58Q4VC31 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 UNC93B2-201ENST00000285383 730 ntBASIC15.66■□□□□ 0.1
CCDC58Q4VC31 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 MIR4651-201ENST00000582622 73 ntBASIC15.66■□□□□ 0.1
CCDC58Q4VC31 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 TSPY26P-202ENST00000565928 3884 ntBASIC15.66■□□□□ 0.1
CCDC58Q4VC31 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC58Q4VC31 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 MED29-202ENST00000594368 1471 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 UBE2SP1-201ENST00000450587 669 ntBASIC15.65■□□□□ 0.1
CCDC58Q4VC31 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC58Q4VC31 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms