Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.45□□□□□ -0.42
PRKDCP78527 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC12.45□□□□□ -0.42
PRKDCP78527 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
PRKDCP78527 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.45□□□□□ -0.42
PRKDCP78527 HLA-V-204ENST00000476601 1289 ntBASIC12.45□□□□□ -0.42
PRKDCP78527 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC12.45□□□□□ -0.42
PRKDCP78527 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 AL161938.1-201ENST00000569833 2180 ntBASIC12.45□□□□□ -0.42
PRKDCP78527 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
PRKDCP78527 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC12.45□□□□□ -0.42
PRKDCP78527 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC12.45□□□□□ -0.42
PRKDCP78527 COBL-210ENST00000632460 1941 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.45□□□□□ -0.42
PRKDCP78527 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 ME2-218ENST00000640965 2476 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC12.45□□□□□ -0.42
PRKDCP78527 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 ZNF890P-202ENST00000530367 1156 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.44□□□□□ -0.42
PRKDCP78527 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 AL844908.2-201ENST00000609461 460 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 AL021578.1-201ENST00000613646 709 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
PRKDCP78527 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC12.44□□□□□ -0.42
PRKDCP78527 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC12.44□□□□□ -0.42
PRKDCP78527 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
PRKDCP78527 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
PRKDCP78527 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.44□□□□□ -0.42
PRKDCP78527 USP32P1-208ENST00000506594 1164 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC12.44□□□□□ -0.42
PRKDCP78527 EMC4-209ENST00000559421 497 ntTSL 2 BASIC12.44□□□□□ -0.42
PRKDCP78527 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC12.44□□□□□ -0.42
PRKDCP78527 AC103810.3-201ENST00000583567 96 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 AC243960.2-201ENST00000600996 747 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 AC093484.2-201ENST00000580996 2166 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC12.44□□□□□ -0.42
PRKDCP78527 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
PRKDCP78527 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
PRKDCP78527 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 PHGDH-209ENST00000641074 1780 ntBASIC12.44□□□□□ -0.42
PRKDCP78527 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PRKDCP78527 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 IGHV3-62-201ENST00000520057 340 ntBASIC12.43□□□□□ -0.42
PRKDCP78527 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC12.43□□□□□ -0.42
PRKDCP78527 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.43□□□□□ -0.42
PRKDCP78527 RPS15-212ENST00000593052 629 ntTSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 AL080243.2-201ENST00000418783 582 ntBASIC12.43□□□□□ -0.42
PRKDCP78527 AC142381.1-201ENST00000426099 345 ntBASIC12.43□□□□□ -0.42
PRKDCP78527 CROCCP4-201ENST00000457096 498 ntBASIC12.43□□□□□ -0.42
PRKDCP78527 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC12.43□□□□□ -0.42
PRKDCP78527 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC12.43□□□□□ -0.42
PRKDCP78527 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
PRKDCP78527 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
PRKDCP78527 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
PRKDCP78527 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms