Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CDH12P55289 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH12P55289 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH12P55289 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH12P55289 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH12P55289 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDH12P55289 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CDH12P55289 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.3■□□□□ 0.2
CDH12P55289 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CDH12P55289 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CDH12P55289 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH12P55289 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.3■□□□□ 0.2
CDH12P55289 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.3■□□□□ 0.2
CDH12P55289 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
CDH12P55289 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDH12P55289 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH12P55289 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 AGGF1P2-201ENST00000426656 2106 ntBASIC16.3■□□□□ 0.2
CDH12P55289 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH12P55289 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CDH12P55289 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 AC016396.2-201ENST00000562575 1417 ntBASIC16.29■□□□□ 0.2
CDH12P55289 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.29■□□□□ 0.2
CDH12P55289 KRT18P57-201ENST00000443599 1254 ntBASIC16.29■□□□□ 0.2
CDH12P55289 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CDH12P55289 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CDH12P55289 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 AC018695.7-201ENST00000624587 2492 ntBASIC16.29■□□□□ 0.2
CDH12P55289 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CDH12P55289 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CDH12P55289 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH12P55289 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH12P55289 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH12P55289 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CDH12P55289 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH12P55289 PCDHA14-201ENST00000506751 2298 ntBASIC16.28■□□□□ 0.2
CDH12P55289 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms