Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN4P29074 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN4P29074 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
PTPN4P29074 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
PTPN4P29074 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.58■□□□□ 0.4
PTPN4P29074 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.58■□□□□ 0.4
PTPN4P29074 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 AP000593.1-201ENST00000393668 712 ntBASIC17.58■□□□□ 0.4
PTPN4P29074 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.58■□□□□ 0.4
PTPN4P29074 AC011498.5-201ENST00000592027 486 ntBASIC17.58■□□□□ 0.4
PTPN4P29074 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.58■□□□□ 0.4
PTPN4P29074 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.58■□□□□ 0.4
PTPN4P29074 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN4P29074 AC093010.1-201ENST00000473625 1624 ntBASIC17.58■□□□□ 0.4
PTPN4P29074 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PTPN4P29074 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN4P29074 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
PTPN4P29074 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.57■□□□□ 0.4
PTPN4P29074 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN4P29074 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.57■□□□□ 0.4
PTPN4P29074 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
PTPN4P29074 NPAP1P7-201ENST00000613027 823 ntBASIC17.57■□□□□ 0.4
PTPN4P29074 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN4P29074 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 FLJ38576-201ENST00000623820 2459 ntBASIC17.57■□□□□ 0.4
PTPN4P29074 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN4P29074 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTPN4P29074 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN4P29074 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN4P29074 AL109659.2-201ENST00000606809 1674 ntBASIC17.56■□□□□ 0.4
PTPN4P29074 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.56■□□□□ 0.4
PTPN4P29074 BX276092.5-203ENST00000456199 560 ntBASIC17.56■□□□□ 0.4
PTPN4P29074 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.56■□□□□ 0.4
PTPN4P29074 AC092119.3-201ENST00000612618 583 ntBASIC17.56■□□□□ 0.4
PTPN4P29074 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 AL157888.1-201ENST00000631930 593 ntBASIC17.56■□□□□ 0.4
PTPN4P29074 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PTPN4P29074 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN4P29074 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PTPN4P29074 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN4P29074 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN4P29074 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PTPN4P29074 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms