Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.27■□□□□ 0.2
PRKNO60260 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.27■□□□□ 0.2
PRKNO60260 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.27■□□□□ 0.2
PRKNO60260 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.27■□□□□ 0.2
PRKNO60260 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PRKNO60260 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PRKNO60260 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PRKNO60260 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.27■□□□□ 0.19
PRKNO60260 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PRKNO60260 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PRKNO60260 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PRKNO60260 AC148477.5-201ENST00000625164 1645 ntBASIC16.27■□□□□ 0.19
PRKNO60260 AC079776.2-201ENST00000641154 1609 ntBASIC16.27■□□□□ 0.19
PRKNO60260 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.26■□□□□ 0.19
PRKNO60260 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.26■□□□□ 0.19
PRKNO60260 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 HLA-A-201ENST00000376802 1334 ntBASIC16.26■□□□□ 0.19
PRKNO60260 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
PRKNO60260 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 KRT18P67-201ENST00000432816 1264 ntBASIC16.26■□□□□ 0.19
PRKNO60260 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.26■□□□□ 0.19
PRKNO60260 AC018712.1-201ENST00000455767 687 ntBASIC16.26■□□□□ 0.19
PRKNO60260 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 RNPS1P1-201ENST00000507437 918 ntBASIC16.26■□□□□ 0.19
PRKNO60260 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.26■□□□□ 0.19
PRKNO60260 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.26■□□□□ 0.19
PRKNO60260 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.26■□□□□ 0.19
PRKNO60260 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PRKNO60260 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
PRKNO60260 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKNO60260 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PRKNO60260 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.25■□□□□ 0.19
PRKNO60260 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PRKNO60260 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.25■□□□□ 0.19
PRKNO60260 SPDYE21P-201ENST00000413323 827 ntBASIC16.25■□□□□ 0.19
PRKNO60260 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 AC005104.2-201ENST00000427818 678 ntBASIC16.25■□□□□ 0.19
PRKNO60260 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 SCARNA2-201ENST00000458748 420 ntBASIC16.25■□□□□ 0.19
PRKNO60260 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.25■□□□□ 0.19
PRKNO60260 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.25■□□□□ 0.19
PRKNO60260 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 AL049840.3-201ENST00000602669 611 ntBASIC16.25■□□□□ 0.19
PRKNO60260 AC025062.2-201ENST00000605477 670 ntBASIC16.25■□□□□ 0.19
PRKNO60260 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.25■□□□□ 0.19
PRKNO60260 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.25■□□□□ 0.19
PRKNO60260 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms