Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 IGHV3-65-201ENST00000523210 341 ntBASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 AC040169.1-201ENST00000565382 521 ntBASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CRYGEP-201ENST00000412192 528 ntBASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 AC108073.2-201ENST00000464002 357 ntBASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 AC064836.3-201ENST00000607928 673 ntBASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
C1QTNF3-AMACRE9PGA6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.46■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.46■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 AP002414.1-201ENST00000391405 1147 ntBASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
C1QTNF3-AMACRE9PGA6 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms