Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 MIR7706-201ENST00000613747 67 ntBASIC17.57■□□□□ 0.4
DKK3Q9UBP4 BX640515.1-201ENST00000617215 977 ntBASIC17.57■□□□□ 0.4
DKK3Q9UBP4 AC008735.5-201ENST00000623544 497 ntBASIC17.57■□□□□ 0.4
DKK3Q9UBP4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 AC148477.5-201ENST00000625164 1645 ntBASIC17.57■□□□□ 0.4
DKK3Q9UBP4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DKK3Q9UBP4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 AC007613.1-201ENST00000572811 2597 ntBASIC17.56■□□□□ 0.4
DKK3Q9UBP4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 AC004817.3-201ENST00000602957 2129 ntBASIC17.56■□□□□ 0.4
DKK3Q9UBP4 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 AC079776.4-201ENST00000511039 504 ntBASIC17.56■□□□□ 0.4
DKK3Q9UBP4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 AC139887.3-201ENST00000568585 713 ntBASIC17.56■□□□□ 0.4
DKK3Q9UBP4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 HLA-J-201ENST00000462773 1622 ntBASIC17.56■□□□□ 0.4
DKK3Q9UBP4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DKK3Q9UBP4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AL049840.3-201ENST00000602669 611 ntBASIC17.55■□□□□ 0.4
DKK3Q9UBP4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AL139327.4-201ENST00000612362 153 ntBASIC17.55■□□□□ 0.4
DKK3Q9UBP4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
DKK3Q9UBP4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 AC012317.2-201ENST00000623305 2251 ntBASIC17.54■□□□□ 0.4
DKK3Q9UBP4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DKK3Q9UBP4 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms