Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 ARMC10P1-201ENST00000313754 855 ntBASIC17.43■□□□□ 0.38
TREX1Q9NSU2 AC003669.1-201ENST00000334569 611 ntBASIC17.43■□□□□ 0.38
TREX1Q9NSU2 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 STK19B-204ENST00000512515 211 ntBASIC17.43■□□□□ 0.38
TREX1Q9NSU2 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 AC012615.1-201ENST00000565797 1299 ntBASIC17.43■□□□□ 0.38
TREX1Q9NSU2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.43■□□□□ 0.38
TREX1Q9NSU2 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AL135999.2-201ENST00000622438 1686 ntBASIC17.42■□□□□ 0.38
TREX1Q9NSU2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 PMPCAP1-201ENST00000508114 1576 ntBASIC17.42■□□□□ 0.38
TREX1Q9NSU2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 POM121L3P-201ENST00000419331 1163 ntBASIC17.42■□□□□ 0.38
TREX1Q9NSU2 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AP000867.3-201ENST00000524675 377 ntBASIC17.42■□□□□ 0.38
TREX1Q9NSU2 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AC092119.3-201ENST00000612618 583 ntBASIC17.42■□□□□ 0.38
TREX1Q9NSU2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AC073592.5-201ENST00000624854 528 ntBASIC17.42■□□□□ 0.38
TREX1Q9NSU2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.42■□□□□ 0.38
TREX1Q9NSU2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 AC104819.1-201ENST00000504587 486 ntBASIC17.41■□□□□ 0.38
TREX1Q9NSU2 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.41■□□□□ 0.38
TREX1Q9NSU2 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms