Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 HR-201ENST00000312841 5351 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 OR6D1P-202ENST00000641007 5290 ntBASIC13.54□□□□□ -0.24
CCDC140Q96MF4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 AC009336.1-201ENST00000608941 1553 ntBASIC13.54□□□□□ -0.24
CCDC140Q96MF4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CCDC140Q96MF4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 AC003669.1-201ENST00000334569 611 ntBASIC13.53□□□□□ -0.24
CCDC140Q96MF4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 NUS1P1-201ENST00000446295 882 ntBASIC13.53□□□□□ -0.24
CCDC140Q96MF4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 MIR5100-201ENST00000579544 119 ntBASIC13.53□□□□□ -0.24
CCDC140Q96MF4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.53□□□□□ -0.24
CCDC140Q96MF4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 PMPCAP1-201ENST00000508114 1576 ntBASIC13.53□□□□□ -0.24
CCDC140Q96MF4 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC140Q96MF4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.52□□□□□ -0.24
CCDC140Q96MF4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC140Q96MF4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC140Q96MF4 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
CCDC140Q96MF4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.52□□□□□ -0.24
CCDC140Q96MF4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC13.52□□□□□ -0.24
CCDC140Q96MF4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC140Q96MF4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 KRT16P4-201ENST00000453883 522 ntBASIC13.52□□□□□ -0.25
CCDC140Q96MF4 STK19B-204ENST00000512515 211 ntBASIC13.52□□□□□ -0.25
CCDC140Q96MF4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 COX5A-204ENST00000567270 579 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 AL591684.3-201ENST00000605187 298 ntBASIC13.52□□□□□ -0.25
CCDC140Q96MF4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC140Q96MF4 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC140Q96MF4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms