Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP4CQ96CF2 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 AC114341.1-201ENST00000618070 349 ntBASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4CQ96CF2 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 AL355312.1-201ENST00000407115 2176 ntBASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 FDX1P1-201ENST00000449115 551 ntBASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 LINC00304-203ENST00000565008 1864 ntBASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4CQ96CF2 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 POM121L3P-201ENST00000419331 1163 ntBASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 AL121912.1-201ENST00000603683 238 ntBASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 REXO1L6P-202ENST00000619970 1078 ntBASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 OR6D1P-203ENST00000641209 4860 ntBASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 AC010460.3-201ENST00000511359 1579 ntBASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4CQ96CF2 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms