Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 HDAC5-211ENST00000592385 2601 ntTSL 515.39■□□□□ 0.059e-6■□□□□ 11.1
UPF1Q92900 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.059e-6■□□□□ 11.1
UPF1Q92900 RFFL-203ENST00000413582 1217 ntTSL 5 BASIC14.95□□□□□ -0.026e-8■□□□□ 11.1
UPF1Q92900 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.049e-6■□□□□ 11.1
UPF1Q92900 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.089e-6■□□□□ 11.1
UPF1Q92900 TNFAIP1-201ENST00000226225 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.239e-6■□□□□ 11.1
UPF1Q92900 NT5E-203ENST00000369651 3918 ntTSL 2 BASIC13.28□□□□□ -0.286e-8■□□□□ 11.1
UPF1Q92900 SPG7-222ENST00000569820 2305 ntTSL 513.16□□□□□ -0.39e-6■□□□□ 11.1
UPF1Q92900 MCL1-203ENST00000464132 1099 ntTSL 212.84□□□□□ -0.359e-6■□□□□ 11.1
UPF1Q92900 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.399e-6■□□□□ 11.1
UPF1Q92900 NT5E-201ENST00000257770 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.446e-8■□□□□ 11.1
UPF1Q92900 AP1B1-205ENST00000415447 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.469e-6■□□□□ 11.1
UPF1Q92900 TYRO3-202ENST00000559066 3876 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.519e-6■□□□□ 11.1
UPF1Q92900 PTPRS-202ENST00000353284 4518 ntTSL 5 BASIC11.87□□□□□ -0.519e-6■□□□□ 11.1
UPF1Q92900 SORL1-201ENST00000260197 10904 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.586e-8■□□□□ 11.1
UPF1Q92900 MC1R-203ENST00000555427 3637 ntTSL 5 BASIC11.32□□□□□ -0.69e-6■□□□□ 11.1
UPF1Q92900 DHRSX-204ENST00000441131 539 ntTSL 210.99□□□□□ -0.659e-6■□□□□ 11.1
UPF1Q92900 NEO1-208ENST00000560328 5895 ntTSL 1 (best)9.41□□□□□ -0.99e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.882e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-220ENST00000622587 802 ntTSL 526.75■■□□□ 1.872e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-215ENST00000546172 869 ntTSL 526.08■■□□□ 1.772e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC22.6■■□□□ 1.212e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-205ENST00000534853 745 ntTSL 522.4■■□□□ 1.182e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC21.93■■□□□ 1.12e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.49■■□□□ 1.032e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-212ENST00000540530 1707 ntTSL 221.49■■□□□ 1.032e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-213ENST00000543289 3356 ntTSL 218.74■□□□□ 0.592e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-206ENST00000535382 3050 ntTSL 214.83□□□□□ -0.042e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-217ENST00000591358 3743 nt14.37□□□□□ -0.112e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.25□□□□□ -0.132e-6■□□□□ 11.1
UPF1Q92900 NDUFS7-214ENST00000545446 3089 ntTSL 213.3□□□□□ -0.282e-6■□□□□ 11.1
UPF1Q92900 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC11.97□□□□□ -0.495e-10■□□□□ 11.1
UPF1Q92900 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.462e-7■□□□□ 11.1
UPF1Q92900 OAZ1-204ENST00000588673 780 ntTSL 328.53■■■□□ 2.164e-9■□□□□ 11.1
UPF1Q92900 OAZ1-209ENST00000592787 857 ntTSL 223.17■■□□□ 1.34e-9■□□□□ 11.1
UPF1Q92900 OAZ1-205ENST00000589361 679 ntTSL 1 (best)22.4■■□□□ 1.184e-9■□□□□ 11.1
UPF1Q92900 NOCT-203ENST00000630479 1572 ntTSL 530.1■■■□□ 2.414e-6■□□□□ 11.1
UPF1Q92900 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 24e-6■□□□□ 11.1
UPF1Q92900 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.572e-11■□□□□ 11.1
UPF1Q92900 ANKRD13B-203ENST00000488766 2671 ntTSL 517.6■□□□□ 0.412e-11■□□□□ 11.1
UPF1Q92900 ANKRD13B-204ENST00000493506 2465 ntTSL 217.28■□□□□ 0.362e-11■□□□□ 11.1
UPF1Q92900 ANKRD13B-202ENST00000487527 3023 ntTSL 1 (best)15.65■□□□□ 0.12e-11■□□□□ 11.1
UPF1Q92900 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.042e-11■□□□□ 11.1
UPF1Q92900 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC12.77□□□□□ -0.372e-11■□□□□ 11.1
UPF1Q92900 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.51e-7■□□□□ 11.1
UPF1Q92900 AC135050.2-202ENST00000532364 499 ntTSL 431.47■■■□□ 2.631e-7■□□□□ 11.1
UPF1Q92900 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC29.23■■■□□ 2.271e-7■□□□□ 11.1
UPF1Q92900 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.581e-7■□□□□ 11.1
UPF1Q92900 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC24.62■■□□□ 1.531e-7■□□□□ 11.1
UPF1Q92900 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC24.44■■□□□ 1.51e-7■□□□□ 11.1
UPF1Q92900 VKORC1-206ENST00000420057 746 ntTSL 221.64■■□□□ 1.051e-7■□□□□ 11.1
UPF1Q92900 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC18.93■□□□□ 0.621e-7■□□□□ 11.1
UPF1Q92900 AC135050.2-201ENST00000533518 2362 ntTSL 1 (best)17.87■□□□□ 0.451e-7■□□□□ 11.1
UPF1Q92900 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.589e-8■□□□□ 11
UPF1Q92900 ST3GAL2-206ENST00000567822 689 ntTSL 323.62■■□□□ 1.372e-6■□□□□ 11
UPF1Q92900 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.92e-6■□□□□ 11
UPF1Q92900 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.04■□□□□ 0.642e-6■□□□□ 11
UPF1Q92900 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.62e-6■□□□□ 11
UPF1Q92900 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.563e-6■□□□□ 11
UPF1Q92900 RABL6-207ENST00000461992 763 ntTSL 1 (best)17.74■□□□□ 0.432e-6■□□□□ 11
UPF1Q92900 EGLN3-209ENST00000553215 1004 ntTSL 1 (best) BASIC17.72■□□□□ 0.432e-6■□□□□ 11
UPF1Q92900 ASAH1-228ENST00000636494 1975 ntTSL 517.71■□□□□ 0.433e-6■□□□□ 11
UPF1Q92900 KANSL1-223ENST00000639150 1815 ntTSL 517.62■□□□□ 0.412e-6■□□□□ 11
UPF1Q92900 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.343e-6■□□□□ 11
UPF1Q92900 LINC02193-201ENST00000565635 377 ntTSL 516.84■□□□□ 0.292e-6■□□□□ 11
UPF1Q92900 KANSL1-203ENST00000571698 2276 ntTSL 515.48■□□□□ 0.072e-6■□□□□ 11
UPF1Q92900 LINC02193-206ENST00000569162 654 ntTSL 515.04■□□□□ -02e-6■□□□□ 11
UPF1Q92900 RABL6-206ENST00000436380 2547 ntAPPRIS ALT2 TSL 214.52□□□□□ -0.082e-6■□□□□ 11
UPF1Q92900 ASAH1-247ENST00000637429 2558 ntTSL 514.39□□□□□ -0.113e-6■□□□□ 11
UPF1Q92900 RABL6-209ENST00000466096 3949 ntTSL 1 (best)14.03□□□□□ -0.162e-6■□□□□ 11
UPF1Q92900 ZNF101-207ENST00000586745 603 ntTSL 513□□□□□ -0.332e-6■□□□□ 11
UPF1Q92900 KANSL1-231ENST00000639853 1425 ntTSL 512.54□□□□□ -0.42e-6■□□□□ 11
UPF1Q92900 KANSL1-229ENST00000639531 2731 ntTSL 512.17□□□□□ -0.462e-6■□□□□ 11
UPF1Q92900 KANSL1-216ENST00000577114 629 ntTSL 512□□□□□ -0.492e-6■□□□□ 11
UPF1Q92900 KANSL1-211ENST00000575318 4935 ntTSL 5 BASIC11.93□□□□□ -0.52e-6■□□□□ 11
UPF1Q92900 KANSL1-201ENST00000262419 5309 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.52e-6■□□□□ 11
UPF1Q92900 LINC02193-203ENST00000568418 2056 ntTSL 5 BASIC11.63□□□□□ -0.552e-6■□□□□ 11
UPF1Q92900 KANSL1-208ENST00000574590 5147 ntAPPRIS ALT1 TSL 2 BASIC11.58□□□□□ -0.562e-6■□□□□ 11
UPF1Q92900 LINC02193-204ENST00000568739 666 ntTSL 510.68□□□□□ -0.72e-6■□□□□ 11
UPF1Q92900 GPBP1L1-205ENST00000468724 559 ntTSL 310.13□□□□□ -0.792e-6■□□□□ 11
UPF1Q92900 DHX9-201ENST00000367549 4240 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.812e-6■□□□□ 11
UPF1Q92900 KANSL1-226ENST00000639375 3392 ntTSL 59.75□□□□□ -0.852e-6■□□□□ 11
UPF1Q92900 KANSL1-217ENST00000638269 3365 ntTSL 59.7□□□□□ -0.862e-6■□□□□ 11
UPF1Q92900 EGLN3-210ENST00000556785 864 ntTSL 29.53□□□□□ -0.882e-6■□□□□ 11
UPF1Q92900 KANSL1-205ENST00000572904 4973 ntAPPRIS P3 TSL 5 BASIC9.3□□□□□ -0.922e-6■□□□□ 11
UPF1Q92900 KANSL1-224ENST00000639279 387 ntTSL 38.92□□□□□ -0.982e-6■□□□□ 11
UPF1Q92900 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.072e-6■□□□□ 11
UPF1Q92900 GPBP1L1-209ENST00000487436 560 ntTSL 27.63□□□□□ -1.192e-6■□□□□ 11
UPF1Q92900 GPBP1L1-206ENST00000479235 3121 ntTSL 27.41□□□□□ -1.222e-6■□□□□ 11
UPF1Q92900 NOL3-206ENST00000564992 677 ntAPPRIS ALT2 TSL 227.98■■■□□ 2.073e-6■□□□□ 11
UPF1Q92900 NOL3-203ENST00000563439 642 ntAPPRIS ALT2 TSL 327.28■■□□□ 1.963e-6■□□□□ 11
UPF1Q92900 NUCB1-207ENST00000452087 864 ntTSL 326.46■■□□□ 1.838e-9■□□□□ 11
UPF1Q92900 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC25.77■■□□□ 1.723e-6■□□□□ 11
UPF1Q92900 NOL3-207ENST00000565560 579 ntAPPRIS ALT2 TSL 325.59■■□□□ 1.693e-6■□□□□ 11
UPF1Q92900 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC25.58■■□□□ 1.693e-6■□□□□ 11
UPF1Q92900 NOL3-208ENST00000565645 519 ntTSL 424.97■■□□□ 1.593e-6■□□□□ 11
UPF1Q92900 RNF10-221ENST00000544124 448 ntTSL 213.17□□□□□ -0.33e-7■□□□□ 11
UPF1Q92900 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.714e-9■□□□□ 11
UPF1Q92900 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC19.04■□□□□ 0.644e-9■□□□□ 11
UPF1Q92900 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.597e-8■□□□□ 11
Retrieved 100 of 15,879 protein–RNA pairs in 75 ms