Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 MYCLP1-201ENST00000372451 1075 ntBASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AC002056.1-201ENST00000395613 760 ntBASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AF228730.6-201ENST00000641497 218 ntBASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AC084121.3-201ENST00000641716 218 ntBASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AC105233.6-201ENST00000642093 218 ntBASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 AC120498.9-201ENST00000339021 3867 ntBASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 AL671277.1-201ENST00000429656 993 ntBASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 AC093214.1-201ENST00000511688 1107 ntBASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.8■□□□□ 0.44
SLC44A3Q8N4M1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 TNXA-203ENST00000507684 2038 ntBASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 PMS2P4-201ENST00000412466 1052 ntBASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 AC005237.2-201ENST00000434368 219 ntBASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 INGX-202ENST00000489074 768 ntBASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 FAM86C2P-203ENST00000528684 1004 ntBASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms