Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 AL024508.2-201ENST00000607749 1894 ntBASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 KRT18P23-201ENST00000435622 1283 ntBASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 AC063952.2-201ENST00000498792 1227 ntBASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
DEPDC4Q8N2C3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 STK33P1-201ENST00000423835 1218 ntBASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 AC116407.2-201ENST00000613639 860 ntBASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
DEPDC4Q8N2C3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 AC100803.2-201ENST00000562459 1963 ntBASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 WWOX-216ENST00000569818 525 ntBASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms