Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC23.04■■□□□ 1.28
USP54Q70EL1 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC23.04■■□□□ 1.28
USP54Q70EL1 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC23.04■■□□□ 1.28
USP54Q70EL1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC23.04■■□□□ 1.28
USP54Q70EL1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC23.04■■□□□ 1.28
USP54Q70EL1 AC109635.5-201ENST00000533593 962 ntBASIC23.04■■□□□ 1.28
USP54Q70EL1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC23.04■■□□□ 1.28
USP54Q70EL1 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC23.04■■□□□ 1.28
USP54Q70EL1 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC23.04■■□□□ 1.28
USP54Q70EL1 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
USP54Q70EL1 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP54Q70EL1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC23.04■■□□□ 1.28
USP54Q70EL1 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC23.04■■□□□ 1.28
USP54Q70EL1 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
USP54Q70EL1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP54Q70EL1 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP54Q70EL1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC23.03■■□□□ 1.28
USP54Q70EL1 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
USP54Q70EL1 TFAMP1-201ENST00000412727 736 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 AC067863.1-201ENST00000494933 530 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC23.03■■□□□ 1.28
USP54Q70EL1 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC23.03■■□□□ 1.28
USP54Q70EL1 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC23.03■■□□□ 1.28
USP54Q70EL1 AJ011932.1-201ENST00000621707 465 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 AC133963.1-201ENST00000504166 1679 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 SLC22A20-204ENST00000530038 1673 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC23.03■■□□□ 1.28
USP54Q70EL1 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC23.03■■□□□ 1.28
USP54Q70EL1 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC23.03■■□□□ 1.28
USP54Q70EL1 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
USP54Q70EL1 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
USP54Q70EL1 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 RNU1-129P-201ENST00000384064 167 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
USP54Q70EL1 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC23.03■■□□□ 1.28
USP54Q70EL1 AC243562.1-201ENST00000560672 389 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 U1.21-201ENST00000580816 167 ntBASIC23.03■■□□□ 1.28
USP54Q70EL1 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP54Q70EL1 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC23.03■■□□□ 1.28
USP54Q70EL1 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC23.02■■□□□ 1.28
USP54Q70EL1 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC23.02■■□□□ 1.28
USP54Q70EL1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
USP54Q70EL1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 HMGA1P7-201ENST00000406908 502 ntBASIC23.02■■□□□ 1.28
USP54Q70EL1 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC23.02■■□□□ 1.28
USP54Q70EL1 TSFM-210ENST00000550559 897 ntTSL 5 BASIC23.02■■□□□ 1.28
USP54Q70EL1 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
USP54Q70EL1 AL031055.1-201ENST00000606362 631 ntBASIC23.02■■□□□ 1.28
USP54Q70EL1 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP54Q70EL1 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
USP54Q70EL1 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC23.02■■□□□ 1.28
USP54Q70EL1 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC23.01■■□□□ 1.27
USP54Q70EL1 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP54Q70EL1 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP54Q70EL1 SPDYE14P-201ENST00000442619 822 ntBASIC23.01■■□□□ 1.27
USP54Q70EL1 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP54Q70EL1 GATB-205ENST00000508611 605 ntTSL 2 BASIC23.01■■□□□ 1.27
USP54Q70EL1 DAD1-205ENST00000543337 501 ntTSL 3 BASIC23.01■■□□□ 1.27
USP54Q70EL1 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC23.01■■□□□ 1.27
USP54Q70EL1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP54Q70EL1 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP54Q70EL1 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC23.01■■□□□ 1.27
USP54Q70EL1 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP54Q70EL1 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP54Q70EL1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
USP54Q70EL1 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
USP54Q70EL1 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
USP54Q70EL1 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC23■■□□□ 1.27
USP54Q70EL1 HCG4-201ENST00000418983 998 ntBASIC23■■□□□ 1.27
USP54Q70EL1 FAM58DP-201ENST00000428076 619 ntBASIC23■■□□□ 1.27
USP54Q70EL1 FAM86GP-201ENST00000448322 971 ntBASIC23■■□□□ 1.27
USP54Q70EL1 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 CD7-202ENST00000578509 925 ntTSL 3 BASIC23■■□□□ 1.27
USP54Q70EL1 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC23■■□□□ 1.27
USP54Q70EL1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
USP54Q70EL1 AL353732.1-201ENST00000569618 1459 ntBASIC23■■□□□ 1.27
USP54Q70EL1 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC23■■□□□ 1.27
USP54Q70EL1 NME9-203ENST00000383180 2133 ntTSL 2 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms