Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.14□□□□□ -0.15
CX3CL1P78423 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CX3CL1P78423 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CX3CL1P78423 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
CX3CL1P78423 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CL1P78423 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CX3CL1P78423 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CX3CL1P78423 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC14.13□□□□□ -0.15
CX3CL1P78423 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.13□□□□□ -0.15
CX3CL1P78423 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CX3CL1P78423 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC14.13□□□□□ -0.15
CX3CL1P78423 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.13□□□□□ -0.15
CX3CL1P78423 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CX3CL1P78423 KRT18P1-202ENST00000452408 1331 ntBASIC14.13□□□□□ -0.15
CX3CL1P78423 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CX3CL1P78423 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.12□□□□□ -0.15
CX3CL1P78423 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CX3CL1P78423 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.12□□□□□ -0.15
CX3CL1P78423 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.12□□□□□ -0.15
CX3CL1P78423 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.12□□□□□ -0.15
CX3CL1P78423 DDX43P3-201ENST00000441064 443 ntBASIC14.12□□□□□ -0.15
CX3CL1P78423 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.12□□□□□ -0.15
CX3CL1P78423 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CX3CL1P78423 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CX3CL1P78423 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
CX3CL1P78423 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CL1P78423 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CX3CL1P78423 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CL1P78423 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CL1P78423 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.11□□□□□ -0.15
CX3CL1P78423 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CL1P78423 TBC1D3P5-201ENST00000579401 1545 ntBASIC14.11□□□□□ -0.15
CX3CL1P78423 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CL1P78423 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CL1P78423 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CL1P78423 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms