Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TPM1P09493 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM1P09493 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM1P09493 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
TPM1P09493 AP000523.1-201ENST00000398242 1049 ntBASIC19.31■□□□□ 0.68
TPM1P09493 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.31■□□□□ 0.68
TPM1P09493 AC098590.1-201ENST00000468126 897 ntBASIC19.31■□□□□ 0.68
TPM1P09493 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM1P09493 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM1P09493 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM1P09493 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM1P09493 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TPM1P09493 BX276092.7-203ENST00000637198 1536 ntBASIC19.3■□□□□ 0.68
TPM1P09493 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
TPM1P09493 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
TPM1P09493 MIR718-201ENST00000390190 70 ntBASIC19.3■□□□□ 0.68
TPM1P09493 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.3■□□□□ 0.68
TPM1P09493 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.3■□□□□ 0.68
TPM1P09493 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TPM1P09493 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
TPM1P09493 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.3■□□□□ 0.68
TPM1P09493 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM1P09493 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.29■□□□□ 0.68
TPM1P09493 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TPM1P09493 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.29■□□□□ 0.68
TPM1P09493 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TPM1P09493 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TPM1P09493 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
TPM1P09493 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TPM1P09493 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.29■□□□□ 0.68
TPM1P09493 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.29■□□□□ 0.68
TPM1P09493 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
TPM1P09493 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.29■□□□□ 0.68
TPM1P09493 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.29■□□□□ 0.68
TPM1P09493 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TPM1P09493 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TPM1P09493 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TPM1P09493 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TPM1P09493 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms