Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17■□□□□ 0.31
HOXC4P09017 PI4KAP1-204ENST00000612579 1703 ntBASIC17■□□□□ 0.31
HOXC4P09017 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17■□□□□ 0.31
HOXC4P09017 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17■□□□□ 0.31
HOXC4P09017 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17■□□□□ 0.31
HOXC4P09017 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
HOXC4P09017 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.99■□□□□ 0.31
HOXC4P09017 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 AC016396.2-201ENST00000562575 1417 ntBASIC16.99■□□□□ 0.31
HOXC4P09017 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HOXC4P09017 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.99■□□□□ 0.31
HOXC4P09017 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.99■□□□□ 0.31
HOXC4P09017 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.99■□□□□ 0.31
HOXC4P09017 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.99■□□□□ 0.31
HOXC4P09017 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.99■□□□□ 0.31
HOXC4P09017 AC002347.1-201ENST00000569543 541 ntBASIC16.99■□□□□ 0.31
HOXC4P09017 OR7E47P-204ENST00000575924 449 ntBASIC16.99■□□□□ 0.31
HOXC4P09017 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.99■□□□□ 0.31
HOXC4P09017 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
HOXC4P09017 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
HOXC4P09017 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
HOXC4P09017 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC4P09017 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HOXC4P09017 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.98■□□□□ 0.31
HOXC4P09017 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
HOXC4P09017 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.98■□□□□ 0.31
HOXC4P09017 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.98■□□□□ 0.31
HOXC4P09017 DNAJB3-201ENST00000446806 729 ntBASIC16.98■□□□□ 0.31
HOXC4P09017 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 AC092865.5-201ENST00000545435 363 ntBASIC16.98■□□□□ 0.31
HOXC4P09017 AC096734.2-201ENST00000562054 433 ntBASIC16.98■□□□□ 0.31
HOXC4P09017 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.98■□□□□ 0.31
HOXC4P09017 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.98■□□□□ 0.31
HOXC4P09017 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HOXC4P09017 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.98■□□□□ 0.31
HOXC4P09017 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.98■□□□□ 0.31
HOXC4P09017 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HOXC4P09017 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HOXC4P09017 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HOXC4P09017 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HOXC4P09017 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.97■□□□□ 0.31
HOXC4P09017 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
HOXC4P09017 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HOXC4P09017 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.97■□□□□ 0.31
HOXC4P09017 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HOXC4P09017 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.97■□□□□ 0.31
HOXC4P09017 RHOQP3-201ENST00000437982 621 ntBASIC16.97■□□□□ 0.31
HOXC4P09017 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.97■□□□□ 0.31
HOXC4P09017 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
HOXC4P09017 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.97■□□□□ 0.31
HOXC4P09017 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.97■□□□□ 0.31
HOXC4P09017 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.97■□□□□ 0.31
HOXC4P09017 MTDHP5-201ENST00000598980 586 ntBASIC16.97■□□□□ 0.31
HOXC4P09017 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 AC002310.6-201ENST00000624451 1377 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms