Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
MMP3P08254 AC087163.2-201ENST00000457299 853 ntBASIC19.25■□□□□ 0.67
MMP3P08254 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.25■□□□□ 0.67
MMP3P08254 SLC25A6P2-201ENST00000497974 877 ntBASIC19.25■□□□□ 0.67
MMP3P08254 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.25■□□□□ 0.67
MMP3P08254 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
MMP3P08254 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
MMP3P08254 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.25■□□□□ 0.67
MMP3P08254 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.25■□□□□ 0.67
MMP3P08254 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.25■□□□□ 0.67
MMP3P08254 AP002472.1-201ENST00000577490 586 ntBASIC19.25■□□□□ 0.67
MMP3P08254 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
MMP3P08254 AC092902.6-201ENST00000641783 218 ntBASIC19.25■□□□□ 0.67
MMP3P08254 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.25■□□□□ 0.67
MMP3P08254 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
MMP3P08254 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.24■□□□□ 0.67
MMP3P08254 BICD1-207ENST00000551848 1962 ntBASIC19.24■□□□□ 0.67
MMP3P08254 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.24■□□□□ 0.67
MMP3P08254 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.24■□□□□ 0.67
MMP3P08254 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
MMP3P08254 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
MMP3P08254 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.24■□□□□ 0.67
MMP3P08254 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
MMP3P08254 CYMP-203ENST00000474680 1263 ntBASIC19.24■□□□□ 0.67
MMP3P08254 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.24■□□□□ 0.67
MMP3P08254 AP000344.2-201ENST00000512987 629 ntBASIC19.24■□□□□ 0.67
MMP3P08254 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.24■□□□□ 0.67
MMP3P08254 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
MMP3P08254 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.24■□□□□ 0.67
MMP3P08254 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
MMP3P08254 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MMP3P08254 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
MMP3P08254 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.23■□□□□ 0.67
MMP3P08254 AC092919.2-201ENST00000623631 1645 ntBASIC19.23■□□□□ 0.67
MMP3P08254 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.23■□□□□ 0.67
MMP3P08254 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.23■□□□□ 0.67
MMP3P08254 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.23■□□□□ 0.67
MMP3P08254 AL513480.1-201ENST00000451731 511 ntBASIC19.23■□□□□ 0.67
MMP3P08254 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.23■□□□□ 0.67
MMP3P08254 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.23■□□□□ 0.67
MMP3P08254 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.23■□□□□ 0.67
MMP3P08254 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.23■□□□□ 0.67
MMP3P08254 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.23■□□□□ 0.67
MMP3P08254 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
MMP3P08254 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
MMP3P08254 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.23■□□□□ 0.67
MMP3P08254 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.23■□□□□ 0.67
MMP3P08254 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.23■□□□□ 0.67
MMP3P08254 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.23■□□□□ 0.67
MMP3P08254 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP3P08254 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
MMP3P08254 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.22■□□□□ 0.67
MMP3P08254 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
MMP3P08254 LINC00304-203ENST00000565008 1864 ntBASIC19.22■□□□□ 0.67
MMP3P08254 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
MMP3P08254 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.22■□□□□ 0.67
MMP3P08254 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.22■□□□□ 0.67
MMP3P08254 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.22■□□□□ 0.67
MMP3P08254 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
MMP3P08254 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
MMP3P08254 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.22■□□□□ 0.67
MMP3P08254 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms