Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.86■□□□□ 0.93
MBD4O95243 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.86■□□□□ 0.93
MBD4O95243 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 AL135999.2-201ENST00000622438 1686 ntBASIC20.86■□□□□ 0.93
MBD4O95243 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.85■□□□□ 0.93
MBD4O95243 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
MBD4O95243 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.85■□□□□ 0.93
MBD4O95243 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
MBD4O95243 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.85■□□□□ 0.93
MBD4O95243 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
MBD4O95243 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 AC073621.1-201ENST00000392730 636 ntBASIC20.85■□□□□ 0.93
MBD4O95243 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.85■□□□□ 0.93
MBD4O95243 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.85■□□□□ 0.93
MBD4O95243 IGHV3-22-201ENST00000520721 359 ntBASIC20.85■□□□□ 0.93
MBD4O95243 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.85■□□□□ 0.93
MBD4O95243 AC006557.2-201ENST00000592985 1240 ntBASIC20.85■□□□□ 0.93
MBD4O95243 AC004706.3-202ENST00000621574 984 ntBASIC20.85■□□□□ 0.93
MBD4O95243 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.85■□□□□ 0.93
MBD4O95243 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MBD4O95243 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
MBD4O95243 AC006504.4-201ENST00000592118 1568 ntBASIC20.85■□□□□ 0.93
MBD4O95243 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
MBD4O95243 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.84■□□□□ 0.93
MBD4O95243 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
MBD4O95243 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
MBD4O95243 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 LINC00982-205ENST00000420957 435 ntBASIC20.84■□□□□ 0.93
MBD4O95243 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.84■□□□□ 0.93
MBD4O95243 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.84■□□□□ 0.93
MBD4O95243 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.84■□□□□ 0.93
MBD4O95243 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.84■□□□□ 0.93
MBD4O95243 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
MBD4O95243 AC117500.6-201ENST00000624871 588 ntBASIC20.84■□□□□ 0.93
MBD4O95243 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
MBD4O95243 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
MBD4O95243 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.84■□□□□ 0.93
MBD4O95243 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.84■□□□□ 0.93
MBD4O95243 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.84■□□□□ 0.93
MBD4O95243 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.84■□□□□ 0.93
MBD4O95243 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MBD4O95243 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.83■□□□□ 0.93
MBD4O95243 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.83■□□□□ 0.93
MBD4O95243 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.83■□□□□ 0.93
MBD4O95243 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.83■□□□□ 0.93
MBD4O95243 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.83■□□□□ 0.93
MBD4O95243 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.83■□□□□ 0.93
MBD4O95243 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.83■□□□□ 0.93
MBD4O95243 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.83■□□□□ 0.93
MBD4O95243 AL356488.2-201ENST00000602755 427 ntBASIC20.83■□□□□ 0.93
MBD4O95243 AL139424.1-201ENST00000607572 797 ntBASIC20.83■□□□□ 0.93
MBD4O95243 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MBD4O95243 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.83■□□□□ 0.93
MBD4O95243 AF228730.7-201ENST00000641842 219 ntBASIC20.83■□□□□ 0.93
MBD4O95243 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.83■□□□□ 0.93
MBD4O95243 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.83■□□□□ 0.93
MBD4O95243 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MBD4O95243 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
MBD4O95243 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.83■□□□□ 0.92
MBD4O95243 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.82■□□□□ 0.92
MBD4O95243 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
MBD4O95243 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MBD4O95243 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MBD4O95243 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MBD4O95243 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.82■□□□□ 0.92
MBD4O95243 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
MBD4O95243 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.82■□□□□ 0.92
MBD4O95243 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.82■□□□□ 0.92
MBD4O95243 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms