Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS4BO75351 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS4BO75351 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.19■□□□□ 0.34
VPS4BO75351 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
VPS4BO75351 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
VPS4BO75351 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VPS4BO75351 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS4BO75351 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS4BO75351 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.19■□□□□ 0.34
VPS4BO75351 AC004263.2-201ENST00000617183 678 ntBASIC17.19■□□□□ 0.34
VPS4BO75351 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS4BO75351 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS4BO75351 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS4BO75351 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 AC016396.2-201ENST00000562575 1417 ntBASIC17.19■□□□□ 0.34
VPS4BO75351 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS4BO75351 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS4BO75351 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
VPS4BO75351 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS4BO75351 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.18■□□□□ 0.34
VPS4BO75351 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VPS4BO75351 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS4BO75351 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS4BO75351 SPDYE13P-201ENST00000445314 798 ntBASIC17.18■□□□□ 0.34
VPS4BO75351 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.18■□□□□ 0.34
VPS4BO75351 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.18■□□□□ 0.34
VPS4BO75351 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS4BO75351 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.18■□□□□ 0.34
VPS4BO75351 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 IFNL4P1-201ENST00000607083 540 ntBASIC17.18■□□□□ 0.34
VPS4BO75351 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS4BO75351 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS4BO75351 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS4BO75351 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 AC022211.2-201ENST00000585075 2527 ntBASIC17.17■□□□□ 0.34
VPS4BO75351 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
VPS4BO75351 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
VPS4BO75351 RASA4DP-201ENST00000460726 1199 ntBASIC17.17■□□□□ 0.34
VPS4BO75351 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
VPS4BO75351 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VPS4BO75351 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS4BO75351 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS4BO75351 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS4BO75351 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 AC016734.2-201ENST00000624325 1377 ntBASIC17.16■□□□□ 0.34
VPS4BO75351 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS4BO75351 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VPS4BO75351 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VPS4BO75351 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS4BO75351 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS4BO75351 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS4BO75351 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS4BO75351 AL121772.3-201ENST00000610840 674 ntBASIC17.16■□□□□ 0.34
VPS4BO75351 AL157888.1-201ENST00000631930 593 ntBASIC17.16■□□□□ 0.34
VPS4BO75351 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS4BO75351 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VPS4BO75351 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms