Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PRKNO60260 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.29■□□□□ 0.2
PRKNO60260 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 LINC00304-203ENST00000565008 1864 ntBASIC16.29■□□□□ 0.2
PRKNO60260 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKNO60260 AC132938.5-201ENST00000624980 1813 ntBASIC16.29■□□□□ 0.2
PRKNO60260 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.29■□□□□ 0.2
PRKNO60260 SLC25A6P5-201ENST00000435663 894 ntBASIC16.29■□□□□ 0.2
PRKNO60260 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.29■□□□□ 0.2
PRKNO60260 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.29■□□□□ 0.2
PRKNO60260 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.29■□□□□ 0.2
PRKNO60260 NKAPP1-205ENST00000585790 367 ntBASIC16.29■□□□□ 0.2
PRKNO60260 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKNO60260 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.29■□□□□ 0.2
PRKNO60260 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKNO60260 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKNO60260 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKNO60260 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PRKNO60260 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKNO60260 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PRKNO60260 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PRKNO60260 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 LINC00896-202ENST00000609602 2128 ntBASIC16.28■□□□□ 0.2
PRKNO60260 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 AC012313.1-201ENST00000593393 3059 ntBASIC16.28■□□□□ 0.2
PRKNO60260 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 AC026471.1-201ENST00000564629 3026 ntBASIC16.28■□□□□ 0.2
PRKNO60260 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.28■□□□□ 0.2
PRKNO60260 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 AL356309.3-201ENST00000624132 1934 ntBASIC16.28■□□□□ 0.2
PRKNO60260 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
PRKNO60260 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.28■□□□□ 0.2
PRKNO60260 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 BX005266.1-201ENST00000473402 457 ntBASIC16.28■□□□□ 0.2
PRKNO60260 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PRKNO60260 AC021087.4-201ENST00000563761 564 ntBASIC16.28■□□□□ 0.2
PRKNO60260 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 GNAS-203ENST00000306120 1878 ntBASIC16.28■□□□□ 0.2
PRKNO60260 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PRKNO60260 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKNO60260 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKNO60260 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.27■□□□□ 0.2
PRKNO60260 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.27■□□□□ 0.2
PRKNO60260 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.27■□□□□ 0.2
PRKNO60260 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.27■□□□□ 0.2
PRKNO60260 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.27■□□□□ 0.2
PRKNO60260 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.27■□□□□ 0.2
PRKNO60260 HNRNPDP1-201ENST00000439535 754 ntBASIC16.27■□□□□ 0.2
PRKNO60260 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PRKNO60260 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 RNA5SP419-201ENST00000515908 135 ntBASIC16.27■□□□□ 0.2
PRKNO60260 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.27■□□□□ 0.2
PRKNO60260 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PRKNO60260 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms