Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
HMGB3O15347 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HMGB3O15347 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
HMGB3O15347 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC14.13□□□□□ -0.15
HMGB3O15347 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC14.13□□□□□ -0.15
HMGB3O15347 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 UNC93B4-201ENST00000505679 747 ntBASIC14.13□□□□□ -0.15
HMGB3O15347 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC14.13□□□□□ -0.15
HMGB3O15347 WT1-AS_3.1-201ENST00000613262 234 ntBASIC14.13□□□□□ -0.15
HMGB3O15347 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
HMGB3O15347 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC14.13□□□□□ -0.15
HMGB3O15347 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HMGB3O15347 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 AC068418.2-201ENST00000577309 3703 ntBASIC14.13□□□□□ -0.15
HMGB3O15347 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.13□□□□□ -0.15
HMGB3O15347 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
HMGB3O15347 AC100803.2-201ENST00000562459 1963 ntBASIC14.13□□□□□ -0.15
HMGB3O15347 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HMGB3O15347 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC14.12□□□□□ -0.15
HMGB3O15347 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.12□□□□□ -0.15
HMGB3O15347 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.12□□□□□ -0.15
HMGB3O15347 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
HMGB3O15347 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 ELP6-205ENST00000439305 880 ntTSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 AC006970.2-201ENST00000450065 779 ntBASIC14.12□□□□□ -0.15
HMGB3O15347 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC14.12□□□□□ -0.15
HMGB3O15347 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 AC098934.4-201ENST00000564127 592 ntBASIC14.12□□□□□ -0.15
HMGB3O15347 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HMGB3O15347 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
HMGB3O15347 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 ANKRD20A6P-201ENST00000618763 204 ntBASIC14.12□□□□□ -0.15
HMGB3O15347 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.12□□□□□ -0.15
HMGB3O15347 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HMGB3O15347 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.12□□□□□ -0.15
HMGB3O15347 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HMGB3O15347 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.12□□□□□ -0.15
HMGB3O15347 AC009102.3-201ENST00000623118 1491 ntBASIC14.12□□□□□ -0.15
HMGB3O15347 AC034236.2-201ENST00000606662 1610 ntBASIC14.12□□□□□ -0.15
HMGB3O15347 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.11□□□□□ -0.15
HMGB3O15347 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.11□□□□□ -0.15
HMGB3O15347 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
HMGB3O15347 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
HMGB3O15347 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC14.11□□□□□ -0.15
HMGB3O15347 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
HMGB3O15347 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
HMGB3O15347 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.11□□□□□ -0.15
HMGB3O15347 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
HMGB3O15347 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.11□□□□□ -0.15
HMGB3O15347 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.11□□□□□ -0.15
HMGB3O15347 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms