Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
POLR2J3Q9H1A7 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
POLR2J3Q9H1A7 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
POLR2J3Q9H1A7 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
POLR2J3Q9H1A7 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
POLR2J3Q9H1A7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
POLR2J3Q9H1A7 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
POLR2J3Q9H1A7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
POLR2J3Q9H1A7 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
POLR2J3Q9H1A7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.39■■□□□ 1.17
POLR2J3Q9H1A7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
POLR2J3Q9H1A7 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.17
POLR2J3Q9H1A7 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
POLR2J3Q9H1A7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
POLR2J3Q9H1A7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
POLR2J3Q9H1A7 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
POLR2J3Q9H1A7 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.36■■□□□ 1.17
POLR2J3Q9H1A7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
POLR2J3Q9H1A7 AC010501.1-201ENST00000606270 1962 ntBASIC22.36■■□□□ 1.17
POLR2J3Q9H1A7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
POLR2J3Q9H1A7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
POLR2J3Q9H1A7 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.36■■□□□ 1.17
POLR2J3Q9H1A7 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
POLR2J3Q9H1A7 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
POLR2J3Q9H1A7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
POLR2J3Q9H1A7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
POLR2J3Q9H1A7 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.33■■□□□ 1.17
POLR2J3Q9H1A7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
POLR2J3Q9H1A7 ZNRF2P2-203ENST00000454624 420 ntBASIC22.33■■□□□ 1.17
POLR2J3Q9H1A7 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.16
POLR2J3Q9H1A7 AC093323.1-202ENST00000635031 2045 ntBASIC22.32■■□□□ 1.16
POLR2J3Q9H1A7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
POLR2J3Q9H1A7 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
POLR2J3Q9H1A7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
POLR2J3Q9H1A7 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
POLR2J3Q9H1A7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
POLR2J3Q9H1A7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.3■■□□□ 1.16
POLR2J3Q9H1A7 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
POLR2J3Q9H1A7 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
POLR2J3Q9H1A7 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
POLR2J3Q9H1A7 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
POLR2J3Q9H1A7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
POLR2J3Q9H1A7 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 HLA-V-202ENST00000446817 847 ntBASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 ERN1-208ENST00000606895 2068 ntBASIC22.29■■□□□ 1.16
POLR2J3Q9H1A7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.28■■□□□ 1.16
POLR2J3Q9H1A7 AL359258.2-201ENST00000564063 1566 ntBASIC22.28■■□□□ 1.16
POLR2J3Q9H1A7 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
POLR2J3Q9H1A7 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
POLR2J3Q9H1A7 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
POLR2J3Q9H1A7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
POLR2J3Q9H1A7 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms