Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 AL049840.3-201ENST00000602669 611 ntBASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 AC008608.2-201ENST00000606089 416 ntBASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB1Q9Y5F3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 COX5BP2-201ENST00000392354 334 ntBASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 MIR940-201ENST00000401276 94 ntBASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 MIR1233-2-201ENST00000408138 82 ntBASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 MIR1233-1-201ENST00000408722 82 ntBASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 AC106730.1-201ENST00000566722 1090 ntBASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHB1Q9Y5F3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
PCDHB1Q9Y5F3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AC125634.1-201ENST00000438758 1403 ntBASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AC132008.2-207ENST00000454517 770 ntBASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AC093909.1-201ENST00000504731 1122 ntBASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 MIR7706-201ENST00000613747 67 ntBASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AC114341.1-201ENST00000618070 349 ntBASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PCDHB1Q9Y5F3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB1Q9Y5F3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PCDHB1Q9Y5F3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB1Q9Y5F3 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB1Q9Y5F3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.5■□□□□ 0.39
PCDHB1Q9Y5F3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB1Q9Y5F3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.5■□□□□ 0.39
PCDHB1Q9Y5F3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms