Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.2□□□□□ -0.14
FOXA2Q9Y261 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AC004263.2-201ENST00000617183 678 ntBASIC14.2□□□□□ -0.14
FOXA2Q9Y261 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AL358472.4-201ENST00000633140 710 ntBASIC14.2□□□□□ -0.14
FOXA2Q9Y261 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AL353692.3-201ENST00000407031 1396 ntBASIC14.2□□□□□ -0.14
FOXA2Q9Y261 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 AC106820.2-201ENST00000563775 3264 ntBASIC14.19□□□□□ -0.14
FOXA2Q9Y261 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 TSPY22P-201ENST00000427496 604 ntBASIC14.19□□□□□ -0.14
FOXA2Q9Y261 PTK2-216ENST00000519881 863 ntTSL 3 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 RNF126P1-202ENST00000569893 925 ntBASIC14.19□□□□□ -0.14
FOXA2Q9Y261 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 AC116407.4-201ENST00000623319 1061 ntBASIC14.19□□□□□ -0.14
FOXA2Q9Y261 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.19□□□□□ -0.14
FOXA2Q9Y261 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA2Q9Y261 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 UBC-206ENST00000538617 1303 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 CROCCP1-201ENST00000426910 5675 ntBASIC14.18□□□□□ -0.14
FOXA2Q9Y261 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 BX276092.5-203ENST00000456199 560 ntBASIC14.18□□□□□ -0.14
FOXA2Q9Y261 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 KRT8P26-201ENST00000534154 1276 ntBASIC14.18□□□□□ -0.14
FOXA2Q9Y261 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 AL121672.3-201ENST00000608644 468 ntBASIC14.18□□□□□ -0.14
FOXA2Q9Y261 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms