Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 KRT18P27-201ENST00000427733 1299 ntBASIC18.69■□□□□ 0.58
SIX4Q9UIU6 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 AC008735.5-201ENST00000623544 497 ntBASIC18.69■□□□□ 0.58
SIX4Q9UIU6 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SIX4Q9UIU6 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.68■□□□□ 0.58
SIX4Q9UIU6 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 LINC00982-205ENST00000420957 435 ntBASIC18.68■□□□□ 0.58
SIX4Q9UIU6 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 AC139887.3-201ENST00000568585 713 ntBASIC18.68■□□□□ 0.58
SIX4Q9UIU6 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 AC004706.3-202ENST00000621574 984 ntBASIC18.68■□□□□ 0.58
SIX4Q9UIU6 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SIX4Q9UIU6 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 NCF1C-201ENST00000438382 1427 ntBASIC18.67■□□□□ 0.58
SIX4Q9UIU6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SIX4Q9UIU6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AC073621.1-201ENST00000392730 636 ntBASIC18.66■□□□□ 0.58
SIX4Q9UIU6 SLC25A1P3-201ENST00000395415 828 ntBASIC18.66■□□□□ 0.58
SIX4Q9UIU6 ACTG1P4-201ENST00000425123 1122 ntBASIC18.66■□□□□ 0.58
SIX4Q9UIU6 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AL353135.1-201ENST00000606729 504 ntBASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AC116407.3-201ENST00000623905 1129 ntBASIC18.66■□□□□ 0.58
SIX4Q9UIU6 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX4Q9UIU6 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms