Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 AC005521.1-201ENST00000393351 872 ntBASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 AC109462.3-201ENST00000573934 613 ntBASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 AC066615.1-201ENST00000640911 628 ntBASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 PCDHA14-201ENST00000506751 2298 ntBASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 AC006011.2-201ENST00000621313 1158 ntBASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMA1Q9UHB6 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 AC125634.1-201ENST00000438758 1403 ntBASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 IGHV3-52-201ENST00000519770 353 ntBASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 AL353801.3-201ENST00000609898 542 ntBASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMA1Q9UHB6 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms