Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 AL353692.3-201ENST00000407031 1396 ntBASIC17.29■□□□□ 0.36
MKS1Q9NXB0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
MKS1Q9NXB0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 EGFEM1P-202ENST00000431685 1563 ntBASIC17.28■□□□□ 0.36
MKS1Q9NXB0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 TSPY15P-201ENST00000457163 923 ntBASIC17.28■□□□□ 0.36
MKS1Q9NXB0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 AC026691.1-201ENST00000602502 2017 ntBASIC17.28■□□□□ 0.36
MKS1Q9NXB0 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MKS1Q9NXB0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MKS1Q9NXB0 CYP2T1P-202ENST00000641596 2535 ntBASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms