Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 AC025062.2-201ENST00000605477 670 ntBASIC16.29■□□□□ 0.2
BEST3Q8N1M1 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 AC100803.2-201ENST00000562459 1963 ntBASIC16.29■□□□□ 0.2
BEST3Q8N1M1 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BEST3Q8N1M1 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 COX5BP2-201ENST00000392354 334 ntBASIC16.28■□□□□ 0.2
BEST3Q8N1M1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 BX005266.1-201ENST00000473402 457 ntBASIC16.28■□□□□ 0.2
BEST3Q8N1M1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 MTDHP4-201ENST00000600287 670 ntBASIC16.28■□□□□ 0.2
BEST3Q8N1M1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 SIRPAP1-201ENST00000448467 1770 ntBASIC16.28■□□□□ 0.2
BEST3Q8N1M1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST3Q8N1M1 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 PMPCAP1-201ENST00000508114 1576 ntBASIC16.27■□□□□ 0.2
BEST3Q8N1M1 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AC103564.2-201ENST00000432853 1299 ntBASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AL671883.3-201ENST00000603274 991 ntBASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AD001527.2-201ENST00000622994 785 ntBASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AC116407.3-201ENST00000623905 1129 ntBASIC16.27■□□□□ 0.2
BEST3Q8N1M1 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BEST3Q8N1M1 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BEST3Q8N1M1 AC079776.2-201ENST00000641154 1609 ntBASIC16.27■□□□□ 0.19
BEST3Q8N1M1 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.26■□□□□ 0.19
BEST3Q8N1M1 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms