Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CNKSR3Q6P9H4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CNKSR3Q6P9H4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 AL592309.1-201ENST00000443127 649 ntBASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 AC069335.1-201ENST00000489972 472 ntBASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 AC190387.1-201ENST00000551683 408 ntBASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 AP000997.3-201ENST00000623333 2250 ntBASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CNKSR3Q6P9H4 KRT18P55-202ENST00000578578 1546 ntBASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 AC079140.1-201ENST00000508039 487 ntBASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 REXO1L9P-201ENST00000604264 2108 ntBASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.69■□□□□ 0.58
CNKSR3Q6P9H4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 TFAMP1-201ENST00000412727 736 ntBASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 KRT18P32-201ENST00000424695 1287 ntBASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 AL512356.2-201ENST00000546955 174 ntBASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 WIZP1-201ENST00000531444 2299 ntBASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.68■□□□□ 0.58
CNKSR3Q6P9H4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms