Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AC244107.1-201ENST00000442033 332 ntBASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AC108073.2-201ENST00000464002 357 ntBASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AL031432.2-201ENST00000566714 459 ntBASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AL928711.1-201ENST00000570165 459 ntBASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 AL096865.1-201ENST00000606796 927 ntBASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 GPR89P-201ENST00000407924 1495 ntBASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTC1Q2NKJ3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 AC006504.4-201ENST00000592118 1568 ntBASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 IGHV3-65-201ENST00000523210 341 ntBASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTC1Q2NKJ3 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 KRT8P47-201ENST00000604727 1398 ntBASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 ESPNP-201ENST00000270691 2015 ntBASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 ELK2BP-201ENST00000415014 1224 ntBASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.68■□□□□ 0.58
CTC1Q2NKJ3 AC008667.4-201ENST00000607370 168 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms