Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF4P78317 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.23■□□□□ 0.19
RNF4P78317 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.23■□□□□ 0.19
RNF4P78317 FDX1P1-201ENST00000449115 551 ntBASIC16.23■□□□□ 0.19
RNF4P78317 AF186996.4-201ENST00000467186 377 ntBASIC16.23■□□□□ 0.19
RNF4P78317 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.23■□□□□ 0.19
RNF4P78317 AC073648.2-201ENST00000510116 352 ntBASIC16.23■□□□□ 0.19
RNF4P78317 STK19B-204ENST00000512515 211 ntBASIC16.23■□□□□ 0.19
RNF4P78317 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.23■□□□□ 0.19
RNF4P78317 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.23■□□□□ 0.19
RNF4P78317 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF4P78317 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.23■□□□□ 0.19
RNF4P78317 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.23■□□□□ 0.19
RNF4P78317 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF4P78317 LTB4R2-202ENST00000528054 3092 ntBASIC16.23■□□□□ 0.19
RNF4P78317 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF4P78317 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.23■□□□□ 0.19
RNF4P78317 HLA-J-201ENST00000462773 1622 ntBASIC16.23■□□□□ 0.19
RNF4P78317 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RNF4P78317 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RNF4P78317 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
RNF4P78317 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
RNF4P78317 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RNF4P78317 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 MRPL3P1-201ENST00000400109 1033 ntBASIC16.22■□□□□ 0.19
RNF4P78317 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 KRT18P67-201ENST00000432816 1264 ntBASIC16.22■□□□□ 0.19
RNF4P78317 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF4P78317 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF4P78317 RNPS1P1-201ENST00000507437 918 ntBASIC16.22■□□□□ 0.19
RNF4P78317 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 AL662844.1-201ENST00000546340 181 ntBASIC16.22■□□□□ 0.19
RNF4P78317 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF4P78317 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF4P78317 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF4P78317 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
RNF4P78317 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
RNF4P78317 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF4P78317 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RNF4P78317 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF4P78317 GNAS-203ENST00000306120 1878 ntBASIC16.21■□□□□ 0.19
RNF4P78317 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RNF4P78317 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.21■□□□□ 0.19
RNF4P78317 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF4P78317 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
RNF4P78317 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
RNF4P78317 BX005266.1-201ENST00000473402 457 ntBASIC16.21■□□□□ 0.19
RNF4P78317 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF4P78317 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
RNF4P78317 AC021087.4-201ENST00000563761 564 ntBASIC16.21■□□□□ 0.19
RNF4P78317 SLC25A6P4-201ENST00000586535 553 ntBASIC16.21■□□□□ 0.19
RNF4P78317 MTDHP4-201ENST00000600287 670 ntBASIC16.21■□□□□ 0.19
RNF4P78317 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 AL022326.1-202ENST00000641533 845 ntBASIC16.21■□□□□ 0.19
RNF4P78317 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms