Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
FOXA1P55317 AC002558.1-201ENST00000488906 803 ntBASIC16.97■□□□□ 0.31
FOXA1P55317 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.97■□□□□ 0.31
FOXA1P55317 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.97■□□□□ 0.31
FOXA1P55317 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 AL118508.1-201ENST00000613502 2345 ntBASIC16.97■□□□□ 0.31
FOXA1P55317 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.97■□□□□ 0.31
FOXA1P55317 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 FLJ38576-201ENST00000623820 2459 ntBASIC16.96■□□□□ 0.31
FOXA1P55317 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
FOXA1P55317 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
FOXA1P55317 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.96■□□□□ 0.31
FOXA1P55317 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.96■□□□□ 0.31
FOXA1P55317 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.96■□□□□ 0.31
FOXA1P55317 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.96■□□□□ 0.31
FOXA1P55317 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
FOXA1P55317 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
FOXA1P55317 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
FOXA1P55317 AC007967.3-201ENST00000434308 558 ntBASIC16.96■□□□□ 0.31
FOXA1P55317 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.96■□□□□ 0.31
FOXA1P55317 AC092647.4-201ENST00000457211 535 ntBASIC16.96■□□□□ 0.31
FOXA1P55317 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.96■□□□□ 0.31
FOXA1P55317 AC019129.2-201ENST00000609837 1235 ntBASIC16.96■□□□□ 0.31
FOXA1P55317 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.96■□□□□ 0.31
FOXA1P55317 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.96■□□□□ 0.31
FOXA1P55317 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA1P55317 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.96■□□□□ 0.3
FOXA1P55317 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
FOXA1P55317 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
FOXA1P55317 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
FOXA1P55317 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.95■□□□□ 0.3
FOXA1P55317 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
FOXA1P55317 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.95■□□□□ 0.3
FOXA1P55317 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
FOXA1P55317 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
FOXA1P55317 AC105020.1-201ENST00000435356 2205 ntBASIC16.95■□□□□ 0.3
FOXA1P55317 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.95■□□□□ 0.3
FOXA1P55317 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.95■□□□□ 0.3
FOXA1P55317 AC063952.2-201ENST00000498792 1227 ntBASIC16.95■□□□□ 0.3
FOXA1P55317 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
FOXA1P55317 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.95■□□□□ 0.3
FOXA1P55317 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.95■□□□□ 0.3
FOXA1P55317 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.95■□□□□ 0.3
FOXA1P55317 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.95■□□□□ 0.3
FOXA1P55317 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.95■□□□□ 0.3
FOXA1P55317 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.95■□□□□ 0.3
FOXA1P55317 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA1P55317 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA1P55317 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
FOXA1P55317 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms